nf-core/goat/taxonsearch @ 0.0.0-3fc6d40
Summary
Query metadata for any taxon across the tree of life.
Get started
Add the following snippet to your workflow script to include this module.
include { GOAT_TAXONSEARCH } from 'nf-core/goat/taxonsearch'
License
MIT License
Process
Name
|
GOAT_TAXONSEARCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
taxon
string
|
The taxon to search. An NCBI taxon ID, or the name of a taxon at any rank. |
taxa_file
file
|
A file of NCBI taxonomy ID's (tips) and/or binomial names. Each line should contain a single entry.File size is limited to 500 entries. *.txt
|
Output
2 channels
#1
taxonsearch
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
TSV file containing search results. *.tsv
|
#2
versions_goat
tuple
${task.process}
string
|
The name of the process |
|---|---|
goat
string
|
The name of the tool |
goat-cli --version | cut -d' ' -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| goat | goat-cli is a command line interface to query the Genomes on a Tree Open API. | https://github.com/genomehubs/goat-cli |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:14:17 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgoat%2Ftaxonsearch/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/goat/taxonsearch/blobs/sha256:24293386c0bd48a247e7d51c9d9feb3fefd89b2c1cb63af13d7c25b769b34099 |
| Size | 2.7 KB |
| Checksum | sha256:24293386c0bd48a247e7d51c9d9feb3fefd89b2c1cb63af13d7c25b769b34099 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:48 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:14:17 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:06:39 (UTC) | 3 | 2.7 KB |