Nextflow Modules
Showing module(s) with keyword "ncbi"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/entrezdirect/esearch | Process | public datasets entrez search ncbi database | Searches a term in a public NCBI database |
| nf-core/entrezdirect/esummary | Process | public datasets ncbi entrez metadata query database | Queries an NCBI database using Unique Identifier(s) |
| nf-core/entrezdirect/xtract | Process | public datasets entrez search ncbi database | Queries an NCBI database using an UID |
| nf-core/fcsgx/fetchdb | Process | fcs-gx database fetch ncbi | Fetches the NCBI FCS-GX database using a provided manifest URL |
| nf-core/goat/taxonsearch | Process | public datasets ncbi genomes on a tree | Query metadata for any taxon across the tree of life. |
| nf-core/krakenuniq/build | Process | metagenomics krakenuniq database build ncbi | Download and build (custom) KrakenUniq databases |
| nf-core/krakenuniq/download | Process | metagenomics krakenuniq database download ncbi | Download KrakenUniq databases and related fles |