nf-core/graphtyper/vcfconcatenate @ 0.0.0-6c4ed3a
Summary
Tools for population-scale genotyping using pangenome graphs.
Get started
Add the following snippet to your workflow script to include this module.
include { GRAPHTYPER_VCFCONCATENATE } from 'nf-core/graphtyper/vcfconcatenate'
License
MIT License
Process
Name
|
GRAPHTYPER_VCFCONCATENATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
vcf
file
|
VCF files *.{vcf,vcf.gz}
|
Output
3 channels
#1
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.vcf.gz.tbi
file
|
Concatenated VCF file index *.{tbi}
|
#2
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.vcf.gz
file
|
Concatenated VCF file *.{vcf.gz}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| graphtyper | A graph-based variant caller capable of genotyping population-scale short read data sets while incorporating previously discovered variants. | https://github.com/DecodeGenetics/graphtyper |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:21:58 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgraphtyper%2Fvcfconcatenate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/graphtyper/vcfconcatenate/blobs/sha256:f20aa11624a9f3cf2bb53235fafb3ad826e2b31578137372a39ff0f0c01425e6 |
| Size | 2.8 KB |
| Checksum | sha256:f20aa11624a9f3cf2bb53235fafb3ad826e2b31578137372a39ff0f0c01425e6 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:58 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:14:26 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:06:55 (UTC) | 4 | 2.8 KB |