nf-core/gvcftools/extractvariants @ 0.0.0-3fc6d40
Summary
Removes all non-variant blocks from a gVCF file to produce a smaller variant-only VCF file.
Get started
Add the following snippet to your workflow script to include this module.
include { GVCFTOOLS_EXTRACTVARIANTS } from 'nf-core/gvcftools/extractvariants'
License
MIT License
Process
Name
|
GVCFTOOLS_EXTRACTVARIANTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gvcf
file
|
GVCF file *.{g.vcf,gvcf}.gz
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz
file
|
Converted variant-only VCF file *.vcf.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gvcftools | gvcftools is a package of small utilities for creating and analyzing gVCF files | https://sites.google.com/site/gvcftools/home |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:15:47 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgvcftools%2Fextractvariants/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gvcftools/extractvariants/blobs/sha256:2d036af8535bd6790c7d37ae1c29a6d0e1295ca314a430e011a96c1f2d5309ce |
| Size | 2.4 KB |
| Checksum | sha256:2d036af8535bd6790c7d37ae1c29a6d0e1295ca314a430e011a96c1f2d5309ce |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:17 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:15:47 (UTC) | 2 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:18 (UTC) | 4 | 2.4 KB |