nf-core/hamronization/summarize @ 0.0.0-3fc6d40
Summary
Tool to summarize and combine all hAMRonization reports into a single file
Get started
Add the following snippet to your workflow script to include this module.
include { HAMRONIZATION_SUMMARIZE } from 'nf-core/hamronization/summarize'
License
MIT License
Process
Name
|
HAMRONIZATION_SUMMARIZE |
|---|
Input
2 channels
reports
file
|
List of multiple hAMRonization reports in either JSON or TSV format *.{json,tsv}
|
|---|
format
string
|
Type of final combined report file to be produced tsv|json|interactive
|
|---|
Output
4 channels
#1
tsv
hamronization_combined_report.tsv
file
|
hAMRonised summary in TSV format *.json
|
|---|
#2
html
hamronization_combined_report.html
file
|
hAMRonised summary in HTML format *.html
|
|---|
#3
json
hamronization_combined_report.json
file
|
hAMRonised summary in JSON format *.json
|
|---|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hamronization | Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification | https://github.com/pha4ge/hAMRonization/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:15:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhamronization%2Fsummarize/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hamronization/summarize/blobs/sha256:de59142c22949431904841a4a7cd37b9afb39b7dc254eaada2f4267b977c7bd2 |
| Size | 2.5 KB |
| Checksum | sha256:de59142c22949431904841a4a7cd37b9afb39b7dc254eaada2f4267b977c7bd2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:26 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:15:56 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:31 (UTC) | 4 | 2.5 KB |