Nextflow Modules
Showing module(s) with keyword "reporting"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/ampcombi | Process | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir DRAMP | A tool to parse and summarise results from antimicrobial peptides tools and present functional classification. |
| nf-core/ampcombi2/cluster | Process | antimicrobial peptides amps parsing reporting align clustering mmseqs2 | A submodule that clusters the merged AMP hits generated from ampcombi2/parsetables and ampcombi2/complete using MMseqs2 cluster. |
| nf-core/ampcombi2/complete | Process | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP | A submodule that merges all output summary tables from ampcombi/parsetables in one summary file. |
| nf-core/ampcombi2/parsetables | Process | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP MMseqs2 InterProScan | A submodule that parses and standardizes the results from various antimicrobial peptide identification tools. |
| nf-core/bracken/combinebrackenoutputs | Process | bracken metagenomics postprocessing reporting | Combine output of metagenomic samples analyzed by bracken. |
| nf-core/gatk4/estimatelibrarycomplexity | Process | duplication metrics estimatelibrarycomplexity gatk4 reporting | Estimates the numbers of unique molecules in a sequencing library. |
| nf-core/hamronization/abricate | Process | amr antimicrobial resistance reporting abricate | Tool to convert and summarize ABRicate outputs using the hAMRonization specification |
| nf-core/hamronization/amrfinderplus | Process | amr antimicrobial resistance arg antimicrobial resistance genes reporting amrfinderplus | Tool to convert and summarize AMRfinderPlus outputs using the hAMRonization specification. |
| nf-core/hamronization/deeparg | Process | amr antimicrobial resistance reporting deeparg | Tool to convert and summarize DeepARG outputs using the hAMRonization specification |
| nf-core/hamronization/fargene | Process | amr antimicrobial resistance arg antimicrobial resistance genes reporting fARGene | Tool to convert and summarize fARGene outputs using the hAMRonization specification |
| nf-core/hamronization/rgi | Process | amr antimicrobial resistance arg antimicrobial resistance genes reporting rgi | Tool to convert and summarize RGI outputs using the hAMRonization specification. |
| nf-core/hamronization/summarize | Process | amr antimicrobial resistance reporting | Tool to summarize and combine all hAMRonization reports into a single file |