nf-core/haplogrep2/classify @ 0.0.0-6c4ed3a
Summary
classification into haplogroups
Get started
Add the following snippet to your workflow script to include this module.
include { HAPLOGREP2_CLASSIFY } from 'nf-core/haplogrep2/classify'
License
MIT License
Process
Name
|
HAPLOGREP2_CLASSIFY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
inputfile
file
|
valid options are hsd, vcf, or fasta files *.{vcf,vcf.gz,fasta,hsd}
|
format
string
|
either "vcf", "fasta" or "hsd" |
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
text file with classification information *.{txt}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| haplogrep2 | A tool for mtDNA haplogroup classification. | https://github.com/seppinho/haplogrep-cmd |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhaplogrep2%2Fclassify/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/haplogrep2/classify/blobs/sha256:6011d2ec8c8a375047fa029b6fa0256b663d24727b6d0e29427bae560f4c8931 |
| Size | 2.2 KB |
| Checksum | sha256:6011d2ec8c8a375047fa029b6fa0256b663d24727b6d0e29427bae560f4c8931 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:30 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:00 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:37 (UTC) | 3 | 2.2 KB |