Nextflow Modules
Showing module(s) with keyword "mtDNA"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/eklipse | Process | eklipse mitochondria mtDNA circos deletion SV | tool for detection and quantification of large mtDNA rearrangements. |
| nf-core/haplocheck | Process | mitochondrial mtDNA contamination | Haplocheck detects contamination patterns in mtDNA AND WGS sequencing studies by analyzing the mitochondrial DNA. Haplocheck also works as a proxy tool for nDNA studies and provides users a graphical report to investigate the contamination further. Internally, it uses the Haplogrep tool, that supports rCRS and RSRS mitochondrial versions. |
| nf-core/haplogrep2/classify | Process | haplogroups classify mtDNA | classification into haplogroups |
| nf-core/haplogrep3/classify | Process | haplogroups classify mtDNA | classification into haplogroups |
| nf-core/mgatk/call | Process | mitochondria mtDNA variants ATAC-seq | Call mitochondrial variants and generate mitochondrial coverage profiles from an indexed BAM file |
| nf-core/mutserve/call | Process | mtDNA heteroplasmy homoplasmy genomics | Call homoplasmic and heteroplasmic positions. |
| nf-core/saltshaker/call | Process | saltshaker mitosalt mtDNA structural-variant calling | mtDNA deletion and duplication calling downstream of mitosalt |
| nf-core/saltshaker/classify | Process | saltshaker mitosalt mtDNA structural-variant calling | mtDNA deletion and duplication classification downstream of mitosalt |
| nf-core/saltshaker/plot | Process | saltshaker mitosalt mtDNA structural-variant calling | mtDNA deletion and duplication plotting downstream of mitosalt |