nf-core/hhsuite/reformat @ 0.0.0-6c4ed3a
Summary
Reformat a Multiple Sequence Alignment (MSA) file
Get started
Add the following snippet to your workflow script to include this module.
include { HHSUITE_REFORMAT } from 'nf-core/hhsuite/reformat'
License
MIT License
Process
Name
|
HHSUITE_REFORMAT |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
aln
file
|
Input MSA file *.{fa,fasta,fas,a2m,a3m,sto,psi,clu,fa.gz,fasta.gz,fas.gz,a2m.gz,a3m.gz,sto.gz,psi.gz,clu.gz}
|
informat
string
|
Format of the input MSA file |
|---|
outformat
string
|
Format of the output MSA file |
|---|
Output
2 channels
#1
msa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${outformat}.gz
file
|
Gzipped reformatted output MSA file *.{fas.gz,a2m.gz,a3m.gz,sto.gz,psi.gz,clu.gz}
|
#2
versions_hhsuite
tuple
${task.process}
string
|
The name of the process |
|---|---|
hhsuite
string
|
The name of the tool |
hhblits -h 2>&1 | sed -n '1s/^HHblits \([0-9.]\+\):/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hhsuite | HH-suite3 for fast remote homology detection and deep protein annotation | https://github.com/soedinglab/hh-suite |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:47 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhhsuite%2Freformat/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hhsuite/reformat/blobs/sha256:9e96ff26948298d073beec6317b784e21084070378ba5eca3392190d1889ef2b |
| Size | 2.6 KB |
| Checksum | sha256:9e96ff26948298d073beec6317b784e21084070378ba5eca3392190d1889ef2b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:47 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:14 (UTC) | 2 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:58 (UTC) | 1 | 2.6 KB |