Nextflow Modules
Showing module(s) with keyword "MSA"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/clustalo/align | Process | alignment MSA genomics | Align sequences using Clustal Omega |
| nf-core/emboss/cons | Process | emboss consensus fasta multiple sequence alignment MSA | cons calculates a consensus sequence from a multiple sequence alignment. To obtain the consensus, the sequence weights and a scoring matrix are used to calculate a score for each amino acid residue or nucleotide at each position in the alignment. |
| nf-core/famsa/align | Process | alignment MSA genomics | Aligns sequences using FAMSA |
| nf-core/foldmason/createdb | Process | alignment MSA genomics structure | Creates a database for Foldmason. |
| nf-core/foldmason/easymsa | Process | alignment MSA genomics structure | Aligns protein structures using foldmason |
| nf-core/foldmason/msa2lddtreport | Process | alignment MSA genomics structure | Renders a visualization report using foldmason |
| nf-core/hhsuite/reformat | Process | reformat MSA hhsuite alignment | Reformat a Multiple Sequence Alignment (MSA) file |
| nf-core/kalign/align | Process | alignment MSA genomics | Aligns sequences using kalign |
| nf-core/learnmsa/align | Process | alignment MSA genomics | Align sequences using learnMSA |
| nf-core/magus/align | Process | MSA alignment genomics graph | Multiple Sequence Alignment using Graph Clustering |
| nf-core/magus/guidetree | Process | MSA guidetree genomics graph | Multiple Sequence Alignment using Graph Clustering |
| nf-core/mtmalign/align | Process | alignment MSA genomics structure | Aligns protein structures using mTM-align |
| nf-core/tcoffee/align | Process | alignment MSA genomics | Aligns sequences using T_COFFEE |
| nf-core/tcoffee/alncompare | Process | alignment MSA evaluation | Compares 2 alternative MSAs to evaluate them. |
| nf-core/tcoffee/consensus | Process | alignment MSA genomics | Computes a consensus alignment using T_COFFEE |
| nf-core/tcoffee/irmsd | Process | alignment MSA evaluation | Computes the irmsd score for a given alignment and the structures. |
| nf-core/tcoffee/regressive | Process | alignment MSA genomics | Aligns sequences using the regressive algorithm as implemented in the T_COFFEE package |
| nf-core/tcoffee/tcs | Process | alignment MSA evaluation | Compute the TCS score for a MSA or for a MSA plus a library file. Outputs the tcs as it is and a csv with just the total TCS score. |
| nf-core/upp/align | Process | alignment MSA genomics structure | Aligns protein structures using UPP |