nf-core/hicap @ 0.0.0-6c4ed3a
Summary
Identify cap locus serotype and structure in your Haemophilus influenzae assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { HICAP } from 'nf-core/hicap'
License
MIT License
Name
|
HICAP |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA formatted assembly file *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
database_dir
directory
|
Optional - Directory containing locus database */*
|
|---|
model_fp
file
|
Optional - Prodigal model to use for gene prediction *.{bin}
|
|---|
gbk
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gbk
file
|
GenBank file and cap locus annotations *.gbk
|
svg
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.svg
file
|
Visualization of annotated cap locus *.svg
|
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Detailed summary of cap locus annotations *.tsv
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hicap | In silico typing of the H. influenzae capsule locus | https://github.com/scwatts/hicap |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhicap/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hicap/blobs/sha256:a3d84f0c1e5be249f0b729e2cf54953e22ef186f2da09e18b62564234c10a97f |
| Size | 2.9 KB |
| Checksum | sha256:a3d84f0c1e5be249f0b729e2cf54953e22ef186f2da09e18b62564234c10a97f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:49 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:15 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:00 (UTC) | 4 | 2.9 KB |