Nextflow Registry | nf-core/hmmer/hmmfetch@0.0.0-6c4ed3a

nf-core/hmmer/hmmfetch @ 0.0.0-6c4ed3a

extract hmm from hmm database file or create index for hmm database

hidden Markov model HMM hmmer hmmfetch

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

extract hmm from hmm database file or create index for hmm database

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMFETCH } from 'nf-core/hmmer/hmmfetch'

MIT License

Process

`Name`	`HMMER_HMMFETCH`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`hmm` file	HMM file with multiple HMM models `*.hmm`

`key` string	Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.

`keyfile` file	File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built. `*.txt`

`index` file	Index file from another run.

Output 3 channels

#1 hmm tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.hmm` file	File with one or more HMM models `selection.hmm`

#2 index tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.ssi` file	Index for HMM database. Created if neither key nor keyfile is specified. `*.ssi`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:24:20 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmfetch/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/hmmfetch/blobs/sha256:466bc0bb3f0ab59cb9bae81566dd18cb4f269a196198fb33ebbc6d2e8839aaea
Size	2.8 KB
Checksum	sha256:466bc0bb3f0ab59cb9bae81566dd18cb4f269a196198fb33ebbc6d2e8839aaea
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:24:20 (UTC)	3	2.8 KB
0.0.0-3fc6d40	22 Apr 2026 15:16:30 (UTC)	3	2.9 KB
0.0.0-0c7146d	08 Apr 2026 19:09:42 (UTC)	3	2.8 KB