Nextflow Modules
Showing module(s) with keyword "HMM"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hhsuite/hhblits | sensitive search HMM alignment | Fast and sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs) |
| nf-core/hhsuite/hhsearch | sensitive search HMM alignment | Sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs) |
| nf-core/hmmer/hmmbuild | search hidden Markov model HMM hmmer hmmsearch | create an hmm profile from a multiple sequence alignment |
| nf-core/hmmer/hmmfetch | hidden Markov model HMM hmmer hmmfetch | extract hmm from hmm database file or create index for hmm database |
| nf-core/hmmer/hmmpress | hidden Markov model HMM hmmer hmmpress hmmscan | compress and index profile database for hmmscan |
| nf-core/hmmer/hmmsearch | Hidden Markov Model HMM hmmer hmmsearch | search profile(s) against a sequence database |
| nf-core/hmmer/jackhmmer | HMM homologs iterative model refinement | iterative searches to detect distant homologs by refining an HMM profile from hits |
| nf-core/nail/search | alignment HMM fasta protein | nail search is a fast and scalable tool for searching protein sequences against protein databases |