nf-core/homer/annotatepeaks @ 0.0.0-0c7146d
Summary
Annotate peaks with HOMER suite
Get started
Add the following snippet to your workflow script to include this module.
include { HOMER_ANNOTATEPEAKS } from 'nf-core/homer/annotatepeaks'
License
MIT License
Process
Name
|
HOMER_ANNOTATEPEAKS |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
peak
file
|
Peak file to annotate |
fasta
file
|
Fasta file of reference genome *.fasta
|
|---|
gtf
file
|
GTF file of reference genome *.gtf
|
|---|
Output
3 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*annotatePeaks.txt
file
|
Annotated peaks in txt file *annotatePeaks.txt
|
#2
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*annStats.txt
file
|
Annotation statistics in txt file *annStats.txt
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| homer | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhomer%2Fannotatepeaks/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/homer/annotatepeaks/blobs/sha256:230f3763573bd9c3aaa1290c335d0262bc248d8579da74a92b8abcbc5bd1a6f5 |
| Size | 2.7 KB |
| Checksum | sha256:230f3763573bd9c3aaa1290c335d0262bc248d8579da74a92b8abcbc5bd1a6f5 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:30 (UTC) | 5 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:54 (UTC) | 2 | 2.7 KB |