Nextflow Modules
Showing module(s) with keyword "peaks"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/homer/annotatepeaks | Process | annotations peaks bed | Annotate peaks with HOMER suite |
| nf-core/homer/findpeaks | Process | annotation peaks enrichment | Find peaks with HOMER suite |
| nf-core/homer/maketagdirectory | Process | peaks bed bam sam | Create a tag directory with the HOMER suite |
| nf-core/homer/makeucscfile | Process | peaks bed bedGraph | Create a UCSC bed graph with the HOMER suite |
| nf-core/homer/pos2bed | Process | peaks bed pos | Converting from HOMER peak to BED file formats |
| nf-core/idr | Process | IDR peaks ChIP-seq ATAC-seq | Measures reproducibility of ChIP-seq, ATAC-seq peaks using IDR (Irreproducible Discovery Rate) |
| nf-core/seacr/callpeak | Process | peak-caller peaks bedgraph cut&tag cut&run chromatin seacr | Call peaks using SEACR on sequenced reads in bedgraph format |