nf-core/homer/findpeaks @ 0.0.0-6c4ed3a
Summary
Find peaks with HOMER suite
Get started
Add the following snippet to your workflow script to include this module.
include { HOMER_FINDPEAKS } from 'nf-core/homer/findpeaks'
License
MIT License
Process
Name
|
HOMER_FINDPEAKS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
tagDir
directory
|
The 'Tag Directory' tagDir
|
uniqmap
directory
|
(directory of binary files specifying uniquely mappable locations) Download from http://biowhat.ucsd.edu/homer/groseq/ uniqmap/
|
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.peaks.txt
file
|
Peaks in txt file *.peaks.txt
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| homer | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. | http://homer.ucsd.edu/homer/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:24:31 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhomer%2Ffindpeaks/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/homer/findpeaks/blobs/sha256:99277e2eb2d5d1294b6f9d45bec549f62e63f3da7c9d013f523cd0982e598f12 |
| Size | 3.1 KB |
| Checksum | sha256:99277e2eb2d5d1294b6f9d45bec549f62e63f3da7c9d013f523cd0982e598f12 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:31 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:56 (UTC) | 3 | 3.1 KB |