nf-core/homer/maketagdirectory @ 0.0.0-0c7146d
Summary
Create a tag directory with the HOMER suite
Get started
Add the following snippet to your workflow script to include this module.
include { HOMER_MAKETAGDIRECTORY } from 'nf-core/homer/maketagdirectory'
License
MIT License
Process
Name
|
HOMER_MAKETAGDIRECTORY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/BED/SAM file *.{bam,bed,sam}
|
fasta
file
|
Fasta file of reference genome *.fasta
|
|---|
Output
3 channels
#1
tagdir
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tagdir
directory
|
The "Tag Directory" *_tagdir
|
#2
taginfo
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tagdir/tagInfo.txt
directory
|
The tagInfo.txt included to ensure there's proper output *_tagdir/tagInfo.txt
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| homer | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. | n/a |
| samtools | SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. | http://www.htslib.org/ |
| DESeq2 | Differential gene expression analysis based on the negative binomial distribution | https://bioconductor.org/packages/DESeq2 |
| edgeR | Empirical Analysis of Digital Gene Expression Data in R | https://bioinf.wehi.edu.au/edgeR |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhomer%2Fmaketagdirectory/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/homer/maketagdirectory/blobs/sha256:9e8d4b7dd952fefc953bc9707087496e7eb9fdceba7d9ad4bbeea04eccf59f78 |
| Size | 3.6 KB |
| Checksum | sha256:9e8d4b7dd952fefc953bc9707087496e7eb9fdceba7d9ad4bbeea04eccf59f78 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:33 (UTC) | 3 | 3.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:57 (UTC) | 2 | 3.6 KB |