nf-core/icountmini/peaks @ 0.0.0-0c7146d
Summary
Runs iCount peaks on a BED file of crosslinks
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_PEAKS } from 'nf-core/icountmini/peaks'
License
MIT License
Process
Name
|
ICOUNTMINI_PEAKS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks *.{bed}
|
sigxls
file
|
TSV file of sigxls from iCount sigxls *.{tsv}
|
Output
2 channels
#1
peaks
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.peaks.bed.gz
file
|
Crosslinks deemed significant by iCount *.{bed.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://github.com/ulelab/iCount-Mini |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:10:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fpeaks/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/icountmini/peaks/blobs/sha256:bd068c79707a0833698198d9ee735dbee80b2026e240b9a7735427686f300500 |
| Size | 2.5 KB |
| Checksum | sha256:bd068c79707a0833698198d9ee735dbee80b2026e240b9a7735427686f300500 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:51 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:47 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:24 (UTC) | 2 | 2.5 KB |