nf-core/icountmini/segment @ 0.0.0-6c4ed3a
Summary
Formats a GTF file for use with iCount sigxls
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_SEGMENT } from 'nf-core/icountmini/segment'
License
MIT License
Process
Name
|
ICOUNTMINI_SEGMENT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gtf
file
|
A GTF file to use for the segmentation *.{gtf}
|
fai
file
|
FAI file corresponding to the reference sequence *.{fai}
|
|---|
Output
3 channels
#1
gtf
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_seg.gtf
file
|
Segmented GTF file for use with iCount sigxls *.{gtf}
|
#2
regions
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_regions.gtf.gz
file
|
Regions file for use with iCount sigxls *.{gtf.gz}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://github.com/ulelab/iCount-Mini |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:24:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fsegment/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/icountmini/segment/blobs/sha256:a2e0a7746d3788501c056634b73f6648c9d720e1df3f30fb3d7f9aded0a2bf0f |
| Size | 2.4 KB |
| Checksum | sha256:a2e0a7746d3788501c056634b73f6648c9d720e1df3f30fb3d7f9aded0a2bf0f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:53 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:49 (UTC) | 2 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:26 (UTC) | 3 | 2.4 KB |