nf-core/icountmini/sigxls @ 0.0.0-0c7146d
Summary
Runs iCount sigxls on a BED file of crosslinks
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_SIGXLS } from 'nf-core/icountmini/sigxls'
License
MIT License
Process
Name
|
ICOUNTMINI_SIGXLS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks *.{bam,bam.gz}
|
segmentation
file
|
A iCount segmentation file *.{gtf}
|
|---|
Output
3 channels
#1
scores
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.scores.tsv
file
|
Crosslink scores calculated by iCount *.{tsv}
|
#2
sigxls
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sigxls.bed.gz
file
|
sigxls bed file *.{bed.gz}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://github.com/ulelab/iCount-Mini |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:10:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fsigxls/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/icountmini/sigxls/blobs/sha256:cbb096733bae291ca785c30bbde09d465ee1505041d3fc0e7c870bc70875c21c |
| Size | 2.5 KB |
| Checksum | sha256:cbb096733bae291ca785c30bbde09d465ee1505041d3fc0e7c870bc70875c21c |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:54 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:50 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:28 (UTC) | 4 | 2.5 KB |