nf-core/irescue @ 0.0.0-0c7146d
Summary
Quantification of transposable elements expression in scRNA-seq
Get started
Add the following snippet to your workflow script to include this module.
include { IRESCUE } from 'nf-core/irescue'
License
MIT License
Name
|
IRESCUE |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM file *.bam
|
genome
string
|
Genome assembly symbol. Not used when bed file is provided. In this case, it can be any value or an empty string. |
|---|
bed
file
|
Bed file of repeats genomic coordinates (optional). *.bed
|
|---|
log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/irescue.log
file
|
Text file containing run information ${prefix}/irescue.log
|
tmp
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/tmp
directory
|
Folder containing temporary files, if kept using the "--keeptmp" argument (optional). ${prefix}/tmp
|
counts
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/counts
directory
|
Folder containing count matrices ${prefix}/counts
|
results
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}
directory
|
Folder containing count matrices and logs ${prefix}
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| irescue | IRescue is a tool for uncertainty-aware quantification of transposable elements expression in scRNA-seq | https://pypi.org/project/IRescue |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:11:02 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Firescue/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/irescue/blobs/sha256:c08e90cf9c63f46785e83aa332c1c637bcf6e5a4f70b20a5b302e50f80922182 |
| Size | 2.7 KB |
| Checksum | sha256:c08e90cf9c63f46785e83aa332c1c637bcf6e5a4f70b20a5b302e50f80922182 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:03 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:17:07 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:11:02 (UTC) | 3 | 2.7 KB |