nf-core/jellyfish/dump @ 0.0.0-6c4ed3a
Summary
Dumps the results from a jellyfish binary file into a human readable format
Get started
Add the following snippet to your workflow script to include this module.
include { JELLYFISH_DUMP } from 'nf-core/jellyfish/dump'
License
MIT License
Process
Name
|
JELLYFISH_DUMP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
jf
file
|
Jellyfish binary k-mer database *.jf
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${extension}
file
|
Human readable k-mer database in fasta format, or in 2-column space delimited format if the -c argument is provided *.{fa,txt}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| jellyfish | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence | https://github.com/gmarcais/Jellyfish |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:26:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fjellyfish%2Fdump/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/jellyfish/dump/blobs/sha256:2135c2ef13fb2a12c94075c6cf2210e52ba12171531b17d54feb58271b8466a1 |
| Size | 2.6 KB |
| Checksum | sha256:2135c2ef13fb2a12c94075c6cf2210e52ba12171531b17d54feb58271b8466a1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:19 (UTC) | 4 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:20 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:07 (UTC) | 4 | 2.5 KB |