Nextflow Registry | nf-core/juicertools/pre@0.0.0-6c4ed3a

nf-core/juicertools/pre @ 0.0.0-6c4ed3a

Create a multi-resolution .hic contact matrix for analysis with Juicer

hic contact map genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 2

Source: nf-core/modules

Authors: @prototaxites

Maintainers: @prototaxites

Create a multi-resolution .hic contact matrix for analysis with Juicer

Add the following snippet to your workflow script to include this module.

include { JUICERTOOLS_PRE } from 'nf-core/juicertools/pre'

MIT License

Process

`Name`	`JUICERTOOLS_PRE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`pairs` file	Optionally gzipped TSV file, in one of a number of formats, including pairs format. See https://github.com/aidenlab/juicer/wiki/Pre#file-format for details. `*.{pairs,tsv}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`genome_id` string	String of a supported genome ID, see https://github.com/aidenlab/juicer/wiki/Pre#usage for details. Incompatible with chromsizes option.
`chromsizes` file	Headerless TSV file describing chromosome sizes with format: chrom_name\tlength Incompatible with genome_id option. `*.{tsv}`

Output 2 channels

#1 hic tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.hic` file	.hic file for analysis and visualisation in Juicer `*.{hic}`

#2 versions_juicertools tuple

`${task.process}` string	The name of the process
`juicer_tools` string	The name of the tool
`juicer_tools -V \| grep "Version" \| sed "s/Juicer Tools Version //"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
juicertools	Visualization and analysis software for Hi-C data	https://github.com/aidenlab/juicer

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:26:20 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fjuicertools%2Fpre/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/juicertools/pre/blobs/sha256:15a9e651048026c2731f109e9fc9d47d0820d969f85a0ca25d0df9deb9f7c4d1
Size	3.1 KB
Checksum	sha256:15a9e651048026c2731f109e9fc9d47d0820d969f85a0ca25d0df9deb9f7c4d1
Downloads	1

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:26:20 (UTC)		1	3.1 KB
0.0.0-0c7146d	08 Apr 2026 19:12:09 (UTC)		1	3.1 KB