Nextflow Modules
Showing module(s) with keyword "hic"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cooler/cload | Process | cool cooler cload hic | Create a cooler from genomic pairs and bins |
| nf-core/cooler/merge | Process | merge cooler hic | Merge multiple coolers with identical axes |
| nf-core/fastq_align_chromap | Workflow | align fasta genome reference chromatin profiles chip-seq atac-seq hic | Align high throughput chromatin profiles using Chromap, updating readgroups if neccessary and then sort with samtools |
| nf-core/juicertools/pre | Process | hic contact map genomics | Create a multi-resolution .hic contact matrix for analysis with Juicer |
| nf-core/metator/pipeline | Process | hic binning metagenomics | Metagenomic Tridimensional Organisation-based Reassembly - A set of scripts that streamlines the processing and binning of metagenomic metaHiC datasets. |
| nf-core/pretextgraph | Process | pretext bedgraph hic contact maps graph | Converts bedgraph formatted data and embeds it as a graph track inside a Pretext contact map |
| nf-core/pretextsnapshot | Process | pretext image hic png jpg bmp contact maps | A module to generate images from Pretext contact maps. |
| nf-core/yahs | Process | scaffolding assembly yahs hic | Performs assembly scaffolding using YaHS |