nf-core/kaiju/kaiju2table @ 0.0.0-3fc6d40
Summary
write your description here
Get started
Add the following snippet to your workflow script to include this module.
include { KAIJU_KAIJU2TABLE } from 'nf-core/kaiju/kaiju2table'
License
MIT License
Process
Name
|
KAIJU_KAIJU2TABLE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
Kaiju input file |
db
file
|
Kaiju database |
|---|
taxon_rank
string
|
Taxonomic rank to display in report pattern: "phylum|class|order|family|genus|species" |
|---|
Output
2 channels
#1
summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Kaiju output file *.txt
|
#2
versions_kaiju
tuple
${task.process}
string
|
The name of the process |
|---|---|
kaiju
string
|
The name of the tool |
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kaiju | Fast and sensitive taxonomic classification for metagenomics | https://kaiju.binf.ku.dk/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:18:33 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fkaiju2table/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kaiju/kaiju2table/blobs/sha256:e3f04325c6f78e1331c1de2938ee34f71020a170028496b4d12475b98fba7598 |
| Size | 2.6 KB |
| Checksum | sha256:e3f04325c6f78e1331c1de2938ee34f71020a170028496b4d12475b98fba7598 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:35 (UTC) | 2 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:33 (UTC) | 3 | 2.6 KB | |
| 0.0.0-e18a462 | 20 Apr 2026 15:00:22 (UTC) | 3 | 2.6 KB | |
| 0.0.0-c0c2de1 | 19 Apr 2026 15:00:12 (UTC) | 2 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:28 (UTC) | 2 | 2.5 KB |