nf-core/kaiju/mergeoutputs @ 0.0.0-e18a462
Summary
Merge two tab-separated output files of Kaiju and Kraken in the column format
Get started
Add the following snippet to your workflow script to include this module.
include { KAIJU_MERGEOUTPUTS } from 'nf-core/kaiju/mergeoutputs'
License
MIT License
Process
Name
|
KAIJU_MERGEOUTPUTS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
kaiju
file
|
Results with taxonomic classification of each read from Kaiju |
kraken
file
|
Results with taxonomic classification of each read from Kraken *.{tsv}
|
db
directory
|
List containing the database and nodes files for Kaiju e.g. [ 'database.fmi', 'nodes.dmp' ] |
|---|
Output
2 channels
#1
merged
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Results with merged taxonomic classification of each read based on the given strategy '1', '2', 'lca' [default] or 'lowest' *.tsv
|
#2
versions_kaiju
tuple
${task.process}
string
|
The name of the process |
|---|---|
kaiju
string
|
The name of the tool |
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kaiju | Fast and sensitive taxonomic classification for metagenomics | https://kaiju.binf.ku.dk/ |
| Version | 0.0.0-e18a462 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 20 Apr 2026 15:00:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fmergeoutputs/0.0.0-e18a462/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kaiju/mergeoutputs/blobs/sha256:08a982bc072c870450166c09995881bf04b71aeba5032ceb2f736459c3d1d048 |
| Size | 3.2 KB |
| Checksum | sha256:08a982bc072c870450166c09995881bf04b71aeba5032ceb2f736459c3d1d048 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:37 (UTC) | 2 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:34 (UTC) | 2 | 3.1 KB | |
| 0.0.0-e18a462 | 20 Apr 2026 15:00:23 (UTC) | 3 | 3.2 KB | |
| 0.0.0-c0c2de1 | 19 Apr 2026 15:00:13 (UTC) | 2 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:30 (UTC) | 2 | 3.0 KB |