Nextflow Registry | nf-core/kaiju/mkfmi@0.0.0-6c4ed3a

nf-core/kaiju/mkfmi @ 0.0.0-6c4ed3a

Make Kaiju FMI-index file from a protein FASTA file

Latest version: 0.0.0-6c4ed3a

Total downloads: 17

Source: nf-core/modules

Authors: @alxndrdiaz @jfy133

Make Kaiju FMI-index file from a protein FASTA file

Add the following snippet to your workflow script to include this module.

include { KAIJU_MKFMI } from 'nf-core/kaiju/mkfmi'

MIT License

Process

`Name`	`KAIJU_MKFMI`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`fasta` file	Uncompressed Protein FASTA file (mandatory) `*.{fa,faa,fasta}`

`nodes_dmp` file	NCBI nodes.dmp file (mandatory) `nodes.dmp`

`names_dmp` file	NCBI names.dmp file (mandatory) `names.dmp`

`keep_intermediate` boolean	Keep intermediate files `true\|false`

Output 4 channels

#1 sa tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.sa` file	Kaiju intermedite bwt-index file (not needed for classification) `*.{sa}`

#2 bwt tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.bwt` file	Kaiju intermedite bwt-index file (not needed for classification) `*.{bwt}`

#3 fmi tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.{fmi,dmp}` file	Kaiju FM-index file, and input {names,nodes}.dmp NCBI taxonomy files required for downstream Kaiju commands `*.{fmi,dmp}`

#4 versions_kaiju tuple

`${task.process}` string	The name of the process
`kaiju` string	The name of the tool
`kaiju -h 2>&1 \| sed -n 1p \| sed 's/^.*Kaiju //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
kaiju	Fast and sensitive taxonomic classification for metagenomics	https://bioinformatics-centre.github.io/kaiju/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:26:38 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fmkfmi/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kaiju/mkfmi/blobs/sha256:21d9bd98aaf56808fdba28fac7e6f21e9befaccf0eb5633a28d1712d59a4124f
Size	3.0 KB
Checksum	sha256:21d9bd98aaf56808fdba28fac7e6f21e9befaccf0eb5633a28d1712d59a4124f
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:26:38 (UTC)	3	3.0 KB
0.0.0-3fc6d40	22 Apr 2026 15:18:36 (UTC)	3	3.0 KB
0.0.0-e18a462	20 Apr 2026 15:00:25 (UTC)	1	3.0 KB
0.0.0-c0c2de1	19 Apr 2026 15:00:14 (UTC)	2	3.0 KB