nf-core/kallisto/index @ 0.0.0-6c4ed3a
Summary
Create kallisto index
Get started
Add the following snippet to your workflow script to include this module.
include { KALLISTO_INDEX } from 'nf-core/kallisto/index'
License
MIT License
Process
Name
|
KALLISTO_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
genome fasta file *.{fasta}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
kallisto
directory
|
Kallisto genome index *.idx
|
#2
versions_kallisto
tuple
${task.process}
string
|
The name of the process |
|---|---|
kallisto
string
|
The name of the tool |
kallisto 2>&1 | head -1 | sed "s/^kallisto //; s/Usage.*//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kallisto | Quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | https://pachterlab.github.io/kallisto/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:26:41 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkallisto%2Findex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kallisto/index/blobs/sha256:8c31fc2eaddd614aea3eace66a46336c12773ecdc945219a2050f082520aba95 |
| Size | 2.1 KB |
| Checksum | sha256:8c31fc2eaddd614aea3eace66a46336c12773ecdc945219a2050f082520aba95 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:41 (UTC) | 3 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:38 (UTC) | 1 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:36 (UTC) | 1 | 2.1 KB |