Nextflow Modules
Showing module(s) with keyword "kallisto"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/kallistobustools/count | Process | scRNA-seq count single-cell kallisto bustools | quantifies scRNA-seq data from fastq files using kb-python. |
| nf-core/kallistobustools/ref | Process | scRNA-seq count single-cell kallisto bustools index | index creation for kb count quantification of single-cell data. |
| nf-core/kallisto/index | Process | kallisto kallisto/index index | Create kallisto index |
| nf-core/kallisto/quant | Process | quant kallisto pseudoalignment | Computes equivalence classes for reads and quantifies abundances |
| nf-core/quantify_pseudo_alignment | Workflow | rnaseq quantification kallisto salmon | Perform quantification with Salmon or Kallisto to produce count tables and SummarizedExperiment objects |
| nf-core/quant_tximport_summarizedexperiment | Workflow | rnaseq quantification tximport summarizedexperiment salmon kallisto rsem | Post-process transcript-level quantification results using tximport to produce count matrices and SummarizedExperiment objects |
| nf-core/tximeta/tximport | Process | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |