Nextflow Modules
Showing module(s) with keyword "kallisto"
| Module | Keywords | Description |
|---|---|---|
| nf-core/kallistobustools/count | scRNA-seq count single-cell kallisto bustools | quantifies scRNA-seq data from fastq files using kb-python. |
| nf-core/kallistobustools/ref | scRNA-seq count single-cell kallisto bustools index | index creation for kb count quantification of single-cell data. |
| nf-core/kallisto/index | kallisto kallisto/index index | Create kallisto index |
| nf-core/kallisto/quant | quant kallisto pseudoalignment | Computes equivalence classes for reads and quantifies abundances |
| nf-core/tximeta/tximport | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |