nf-core/krakentools/combinekreports @ 0.0.0-6c4ed3a
Summary
Takes multiple kraken-style reports and combines them into a single report file
Get started
Add the following snippet to your workflow script to include this module.
include { KRAKENTOOLS_COMBINEKREPORTS } from 'nf-core/krakentools/combinekreports'
License
MIT License
Process
Name
|
KRAKENTOOLS_COMBINEKREPORTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
kreports
file
|
List of kraken-style report files *.{txt,kreport}
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Combined kreport file of all input files *.txt
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| krakentools | KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs. | https://github.com/jenniferlu717/KrakenTools |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:27:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkrakentools%2Fcombinekreports/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/krakentools/combinekreports/blobs/sha256:0362cd0d83623364b5fe8f59b1d7acc0e656e211748ac0fa82a493e27160a17b |
| Size | 2.3 KB |
| Checksum | sha256:0362cd0d83623364b5fe8f59b1d7acc0e656e211748ac0fa82a493e27160a17b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:15 (UTC) | 1 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:00 (UTC) | 1 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:18 (UTC) | 1 | 2.3 KB |