Nextflow Modules
Showing module(s) with keyword "table"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bcftools/pluginvcf2table | bcftools vcf table variant calling | Converts VCF/BCF files into a tab-delimited table using the bcftools +vcf2table plugin. Each variant is output as one row, with INFO and FORMAT fields as columns. |
| nf-core/dastool/dastool | binning das tool table de novo bins contigs assembly das_tool | DAS Tool binning step. |
| nf-core/dastool/fastatocontig2bin | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/dastool/scaffolds2bin | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/ganon/table | ganon metagenomics profiling taxonomy k-mer classification report table | Generate a multi-sample report file from the output of ganon report runs |
| nf-core/gatk4/baserecalibrator | base quality score recalibration table bqsr gatk4 sort | Generate recalibration table for Base Quality Score Recalibration (BQSR) |
| nf-core/gatk4spark/baserecalibrator | base quality score recalibration table bqsr gatk4spark sort | Generate recalibration table for Base Quality Score Recalibration (BQSR) |
| nf-core/gatk4/variantstotable | filter gatk4 table vcf | Extract fields from a VCF file to a tab-delimited table |
| nf-core/krakentools/combinekreports | kraken krakentools metagenomics table combining merging | Takes multiple kraken-style reports and combines them into a single report file |
| nf-core/metaphlan3/mergemetaphlantables | metagenomics classification merge table profiles | Merges output abundance tables from MetaPhlAn3 |
| nf-core/metaphlan/mergemetaphlantables | metagenomics classification merge table profiles | Merges output abundance tables from MetaPhlAn4 |
| nf-core/vembrane/table | vcf bcf table genomics variant annotation | Creates tabular (TSV) files from VCF/BCF data with flexible Python expressions |