|
nf-core/dastool/dastool
|
binning
das tool
table
de novo
bins
contigs
assembly
das_tool
|
DAS Tool binning step.
|
|
nf-core/dastool/fastatocontig2bin
|
binning
das tool
table
de novo
bins
contigs
assembly
das_tool
|
Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format
|
|
nf-core/dastool/scaffolds2bin
|
binning
das tool
table
de novo
bins
contigs
assembly
das_tool
|
Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format
|
|
nf-core/ganon/table
|
ganon
metagenomics
profiling
taxonomy
k-mer
classification
report
table
|
Generate a multi-sample report file from the output of ganon report runs
|
|
nf-core/gatk4/baserecalibrator
|
base quality score recalibration
table
bqsr
gatk4
sort
|
Generate recalibration table for Base Quality Score Recalibration (BQSR)
|
|
nf-core/gatk4spark/baserecalibrator
|
base quality score recalibration
table
bqsr
gatk4spark
sort
|
Generate recalibration table for Base Quality Score Recalibration (BQSR)
|
|
nf-core/gatk4/variantstotable
|
filter
gatk4
table
vcf
|
Extract fields from a VCF file to a tab-delimited table
|
|
nf-core/krakentools/combinekreports
|
kraken
krakentools
metagenomics
table
combining
merging
|
Takes multiple kraken-style reports and combines them into a single report file
|
|
nf-core/metaphlan3/mergemetaphlantables
|
metagenomics
classification
merge
table
profiles
|
Merges output abundance tables from MetaPhlAn3
|
|
nf-core/metaphlan/mergemetaphlantables
|
metagenomics
classification
merge
table
profiles
|
Merges output abundance tables from MetaPhlAn4
|
|
nf-core/vembrane/table
|
vcf
bcf
table
genomics
variant
annotation
|
Creates tabular (TSV) files from VCF/BCF data with flexible Python expressions
|