Nextflow Registry | nf-core/last/mafswap@0.0.0-6c4ed3a

nf-core/last/mafswap @ 0.0.0-6c4ed3a

Reorder alignments in a MAF file

LAST reorder alignment MAF

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @charles-plessy

Maintainers: @charles-plessy

Reorder alignments in a MAF file

Add the following snippet to your workflow script to include this module.

include { LAST_MAFSWAP } from 'nf-core/last/mafswap'

MIT License

Process

`Name`	`LAST_MAFSWAP`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`maf` file	Multiple Alignment Format (MAF) file, optionally compressed with gzip `*.{maf.gz,maf}`

Output 2 channels

#1 maf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.maf.gz` file	Multiple Alignment Format (MAF) file, compressed with gzip `*.{maf.gz}`

#2 versions_last tuple

`${task.process}` string	The name of the process
`last` string	The name of the tool
`lastal --version \| sed 's/lastal //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
last	LAST finds & aligns related regions of sequences.	https://gitlab.com/mcfrith/last

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:27:34 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Flast%2Fmafswap/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/last/mafswap/blobs/sha256:a63e1a5a1978b5f98e281ed309facd417cfb24053b020cf9fe71b47d72ef9958
Size	2.3 KB
Checksum	sha256:a63e1a5a1978b5f98e281ed309facd417cfb24053b020cf9fe71b47d72ef9958
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:27:34 (UTC)		4	2.3 KB
0.0.0-0c7146d	08 Apr 2026 19:13:47 (UTC)		3	2.3 KB