nf-core/last/train @ 0.0.0-0c7146d
Summary
Find suitable score parameters for sequence alignment
Get started
Add the following snippet to your workflow script to include this module.
include { LAST_TRAIN } from 'nf-core/last/train'
License
MIT License
Process
Name
|
LAST_TRAIN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastx
file
|
FASTA/FASTQ file *.{fasta,fastq}
|
index
directory
|
Directory containing the files of the LAST index lastdb/
|
|---|
Output
3 channels
#1
multiqc
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
Alignment parameter summary for MultiQC *.tsv
|
#2
param_file
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.train
file
|
Trained parameter file *.train
|
#3
versions_last
tuple
${task.process}
string
|
The name of the process |
|---|---|
last
string
|
The name of the tool |
lastal --version | sed 's/lastal //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| last | LAST finds & aligns related regions of sequences. | https://gitlab.com/mcfrith/last |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:13:52 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Flast%2Ftrain/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/last/train/blobs/sha256:e8471e1840d383a1f01ff3aa3db82762ac1803c43ba9e5c84ab8ee7faee3a2d3 |
| Size | 2.9 KB |
| Checksum | sha256:e8471e1840d383a1f01ff3aa3db82762ac1803c43ba9e5c84ab8ee7faee3a2d3 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:38 (UTC) | 2 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:52 (UTC) | 4 | 2.9 KB |