nf-core/lofreq/callparallel @ 0.0.0-3fc6d40
Summary
It predicts variants using multiple processors
Get started
Add the following snippet to your workflow script to include this module.
include { LOFREQ_CALLPARALLEL } from 'nf-core/lofreq/callparallel'
License
MIT License
Name
|
LOFREQ_CALLPARALLEL |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bam
file
|
Tumor sample sorted BAM file *.{bam}
|
bai
file
|
BAM index file *.{bam.bai}
|
intervals
file
|
BED file containing target regions for variant calling *.{bed}
|
meta2
map
|
Groovy Map containing sample information about the reference fasta e.g. [ id:'reference' ] |
|---|---|
fasta
file
|
Reference genome FASTA file *.{fasta}
|
meta3
map
|
Groovy Map containing sample information about the reference fasta fai e.g. [ id:'reference' ] |
|---|---|
fai
file
|
Reference genome FASTA index file *.{fai}
|
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz.tbi
file
|
Index of vcf file *.{vcf.gz.tbi}
|
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz
file
|
Predicted variants file *.{vcf}
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| lofreq | Lofreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It's call-parallel programme predicts variants using multiple processors | https://csb5.github.io/lofreq/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:19:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Flofreq%2Fcallparallel/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/lofreq/callparallel/blobs/sha256:a6fa2f5e5cb85ac6664f4151e2d489f601795f3671d36b69022b22cad63436cb |
| Size | 3.0 KB |
| Checksum | sha256:a6fa2f5e5cb85ac6664f4151e2d489f601795f3671d36b69022b22cad63436cb |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:55 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:30 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:14:21 (UTC) | 3 | 2.9 KB |