nf-core/lofreq/filter @ 0.0.0-0c7146d
Summary
Lofreq subcommand to remove variants with low coverage or strand bias potential
Get started
Add the following snippet to your workflow script to include this module.
include { LOFREQ_FILTER } from 'nf-core/lofreq/filter'
License
MIT License
Process
Name
|
LOFREQ_FILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF input file *.{vcf}
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gz
file
|
VCF filtered output file *.{vcf}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| lofreq | A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data | https://csb5.github.io/lofreq/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:14:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Flofreq%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/lofreq/filter/blobs/sha256:5262ce85fe0d333f6116da3634747a6d2d6367580930f830b2feb6a2d6afda83 |
| Size | 2.2 KB |
| Checksum | sha256:5262ce85fe0d333f6116da3634747a6d2d6367580930f830b2feb6a2d6afda83 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:57 (UTC) | 1 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:31 (UTC) | 1 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:14:23 (UTC) | 1 | 2.2 KB |