nf-core/mash/screen @ 0.0.0-3fc6d40
Summary
Screens query sequences against large sequence databases
Get started
Add the following snippet to your workflow script to include this module.
include { MASH_SCREEN } from 'nf-core/mash/screen'
License
MIT License
Process
Name
|
MASH_SCREEN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
query
file
|
Query sequences *.fastq.gz
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sequences_sketch
file
|
sketch file of sequences |
Output
2 channels
#1
screen
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.screen
file
|
List of sequences from fastx_db similar to query sequences *.screen
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mash | Fast sequence distance estimator that uses MinHash | https://github.com/marbl/Mash |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:20:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmash%2Fscreen/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mash/screen/blobs/sha256:963727d2eb868b88687e49ce9eed3e985953f0a88745c5622bc9b95bd237ac47 |
| Size | 2.4 KB |
| Checksum | sha256:963727d2eb868b88687e49ce9eed3e985953f0a88745c5622bc9b95bd237ac47 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:32 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:20:59 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:16:16 (UTC) | 2 | 2.3 KB |