Nextflow Modules
Showing module(s) with keyword "containment"
| Module | Keywords | Description |
|---|---|---|
| nf-core/mash/screen | screen containment contamination taxonomic assignment | Screens query sequences against large sequence databases |
| nf-core/sourmash/compare | compare FracMinHash sketch containment sourmash metagenomics genomics kmer | Compare many FracMinHash signatures generated by sourmash sketch. |
| nf-core/sourmash/gather | FracMinHash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling | Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome. |
| nf-core/sourmash/taxannotate | fracminhash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling | Annotate list of metagenome members (based on sourmash signature matches) with taxonomic information. |