nf-core/mcroni @ 0.0.0-6c4ed3a
Summary
Analysis of mcr-1 gene (mobilized colistin resistance) for sequence variation
Get started
Add the following snippet to your workflow script to include this module.
include { MCRONI } from 'nf-core/mcroni'
License
MIT License
Process
Name
|
MCRONI |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
A fasta file. *.{fasta.gz,fasta,fa.gz,fa,fna.gz,fna}
|
Output
3 channels
#1
fa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa
file
|
mcr-1 matching sequences *.fa
|
#2
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
mcroni results in TSV format *.tsv
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mcroni | Scripts for finding and processing promoter variants upstream of mcr-1 | https://github.com/liampshaw/mcroni |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:29:40 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmcroni/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mcroni/blobs/sha256:c940e8cbb683c0d4eb13106a2f5c340f414b29dc77279a522911c00781bd43f8 |
| Size | 2.4 KB |
| Checksum | sha256:c940e8cbb683c0d4eb13106a2f5c340f414b29dc77279a522911c00781bd43f8 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:40 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:10 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:16:30 (UTC) | 3 | 2.4 KB |