nf-core/mcstaging/macsima2mc @ 0.0.0-0c7146d
Summary
Staging module for MCMICRO transforming MACSima data sets for being registered with ASHLAR in MCMICRO.
Get started
Add the following snippet to your workflow script to include this module.
include { MCSTAGING_MACSIMA2MC } from 'nf-core/mcstaging/macsima2mc'
License
MIT License
Name
|
MCSTAGING_MACSIMA2MC |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input_dir
directory
|
Absolute path to the the parent folder of the raw tiles, whose name follows the pattern X_Cycle_N,where N represents the cycle number *Cycle*
|
output_dir
string
|
Absolute path to the directory in which the outputs will be saved. If the output directory doesn't exist it will be created. |
out_dir
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${output_dir}/*
directory
|
Output directory containing subdirectories per well-rack-roi-exp combination. Each subdirectory contains a markers.csv table and a raw/ folder with ome.tif files. */
|
versions_macsima2mc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
macsima2mc
string
|
The tool name |
python -m pip show macsima2mc | grep "Version" | sed -e "s/Version: //g"
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mcstaging | Staging modules for MCMICRO | https://github.com/SchapiroLabor/macsima2mc |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 19:16:34 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmcstaging%2Fmacsima2mc/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mcstaging/macsima2mc/blobs/sha256:ddf439db3f04676ed568b4eb8cc551e9a63ac469988510c519b7317fa546557f |
| Size | 2.7 KB |
| Checksum | sha256:ddf439db3f04676ed568b4eb8cc551e9a63ac469988510c519b7317fa546557f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:16:34 (UTC) | 3 | 2.7 KB |