Nextflow Modules
Showing module(s) with keyword "mcmicro"
| Module | Keywords | Description |
|---|---|---|
| nf-core/backsub | background cycif autofluorescence image_analysis mcmicro highly_multiplexed_imaging | Pixel-by-pixel channel subtraction tool for multiplexed immunofluorescence data. |
| nf-core/celesta | highly_multiplexed_imaging cell_type_identification cell_phenotyping image_analysis mcmicro machine_learning | Unsupervised machine learning for cell type identification in multiplexed imaging using protein expression and cell neighborhood information without ground truth |
| nf-core/mcquant | quantification image_analysis mcmicro highly_multiplexed_imaging | Mcquant extracts single-cell data given a multi-channel image and a segmentation mask. |
| nf-core/mcstaging/macsima2mc | imaging ome-tif mcmicro staging spatial-omics macsima | Staging module for MCMICRO transforming MACSima data sets for being registered with ASHLAR in MCMICRO. |