nf-core/medaka @ 0.0.0-3fc6d40
Summary
A tool to create consensus sequences and variant calls from nanopore sequencing data
Get started
Add the following snippet to your workflow script to include this module.
include { MEDAKA } from 'nf-core/medaka'
License
MIT License
Process
Name
|
MEDAKA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input nanopore fasta/FastQ files *.{fasta,fa,fastq,fastq.gz,fq,fq.gz}
|
assembly
file
|
Genome assembly *.{fasta,fa}
|
Output
2 channels
#1
assembly
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa.gz
file
|
Polished genome assembly *.fa.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| medaka | Neural network sequence error correction. | https://nanoporetech.github.io/medaka/index.html |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:21:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmedaka/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/medaka/blobs/sha256:fd9a363b52019e8785926d8e9083ea9c509760832431e5478d66194054f69495 |
| Size | 2.2 KB |
| Checksum | sha256:fd9a363b52019e8785926d8e9083ea9c509760832431e5478d66194054f69495 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:44 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:13 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:16:41 (UTC) | 3 | 2.2 KB |