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nf-core/merquryfk/hapmaker @ 0.0.0-0c7146d

Produces maternal and paternal FastK kmer tables from maternal, paternal and child FastK tables

k-mer frequency trio binning reference-free assembly evaluation
Latest version: 0.0.0-6c4ed3a
Total downloads: 6
Source: nf-core/modules
Authors: @prototaxites @yumisims
Maintainers: @prototaxites @yumisims

Summary

Produces maternal and paternal FastK kmer tables from maternal, paternal and child FastK tables

Get started

Add the following snippet to your workflow script to include this module.

include { MERQURYFK_HAPMAKER } from 'nf-core/merquryfk/hapmaker'

License

MIT License

Process
Name MERQURYFK_HAPMAKER
Input 3 channels
#1 tuple
meta map

Groovy Map containing maternal sample information e.g. [ id:'test', single_end:false ]
matktab file

maternal ktab files from the program FastK

 *.ktab*
#2 tuple
meta2 map

Groovy Map containing paternal sample information e.g. [ id:'test', single_end:false ]
patktab file

paternal ktab files from the program FastK

 *.ktab*
#3 tuple
meta3 map

Groovy Map containing child sample information e.g. [ id:'test', single_end:false ]
childktab file

child ktab files from the program FastK

 *.ktab*
Output 4 channels
#1 mat_hap_ktab tuple
meta map

Groovy Map containing maternal sample information e.g. [ id:'test', single_end:false ]
*${input_mat}.hap.ktab* file

Maternal haplotype-specific k-mer table files generated by HAPmaker from FastK tables.

 *.hap.ktab*
#2 pat_hap_ktab tuple
meta2 map

Groovy Map containing paternal sample information e.g. [ id:'test', single_end:false ]
*${input_pat}.hap.ktab* file

Paternal haplotype-specific k-mer table files generated by HAPmaker from FastK tables.

 *.hap.ktab*
#3 versions_fastk tuple
${task.process} string

Name of the process
fastk string

Name of the tool
1.2 string

The expression to obtain the version of the tool
#4 versions_merquryfk tuple
${task.process} string

Name of the process
merquryfk string

The name of the tool
1.2 string

The expression to obtain the version of the tool
Tool Description Homepage
merquryfk FastK based version of Merqury https://github.com/thegenemyers/MERQURY.FK
Version 0.0.0-0c7146d
Commit ID 6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date 08 Apr 2026 19:16:57 (UTC)
Download URL https://registry.nextflow.io/api/v1/modules/nf-core%2Fmerquryfk%2Fhapmaker/0.0.0-0c7146d/download
OCI Store URL https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/merquryfk/hapmaker/blobs/sha256:cf8b092580515f9c1981007c73a877cf23470c827478d3ca0396764303488e5c
Size 3.0 KB
Checksum sha256:cf8b092580515f9c1981007c73a877cf23470c827478d3ca0396764303488e5c
Downloads 3
Version Date Status Downloads Size
0.0.0-6c4ed3a 23 Apr 2026 15:29:56 (UTC) 3 3.0 KB
0.0.0-0c7146d