Nextflow Modules
Showing module(s) with keyword "reference-free"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/merquryfk/hapmaker | Process | k-mer frequency trio binning reference-free assembly evaluation | Produces maternal and paternal FastK kmer tables from maternal, paternal and child FastK tables |
| nf-core/merquryfk/merquryfk | Process | Merqury reference-free assembly evaluation | FastK based version of Merqury |
| nf-core/meryl/count | Process | k-mer count reference-free | A genomic k-mer counter (and sequence utility) with nice features. |
| nf-core/meryl/histogram | Process | k-mer histogram reference-free | A genomic k-mer counter (and sequence utility) with nice features. |
| nf-core/meryl/unionsum | Process | k-mer unionsum reference-free | A genomic k-mer counter (and sequence utility) with nice features. |
| nf-core/smudgeplot/all | Process | Smudgeplot reference-free kmer plots | Generating smudgeplot k-mer inference plots |
| nf-core/smudgeplot/hetmers | Process | Smudgeplot reference-free kmer ploidy genomics | Inference of ploidy and heterozygosity structure using whole genome sequencing data using FASTK databases |