nf-core/metamaps/mapdirectly @ 0.0.0-3fc6d40
Summary
Maps long reads to a metamaps database
Get started
Add the following snippet to your workflow script to include this module.
include { METAMAPS_MAPDIRECTLY } from 'nf-core/metamaps/mapdirectly'
License
MIT License
Process
Name
|
METAMAPS_MAPDIRECTLY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
Input fastq file containing query sequences *.{fq,fastq,fastq.gz,fq.gz}
|
database
file
|
Database file in fasta format *.{fa,fasta}
|
|---|
Output
5 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
meta_file
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*classification_res.meta
file
|
Statistics for mapping result *.{classification_res.meta}
|
#3
para_file
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*classification_res.parameters
file
|
Log with parameters *.{classification_res.parameters}
|
#4
classification_res
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*classification_res
file
|
Coordinates where reads map *.{classification_res}
|
#5
meta_unmappedreadsLengths
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*classification_res.meta.unmappedReadsLengths
file
|
Statistics for length of unmapped reads *.{classification_res.meta.unmappedReadsLengths}
|
| Tool | Description | Homepage |
|---|---|---|
| metamaps | MetaMaps is a tool for long-read metagenomic analysis | https://github.com/DiltheyLab/MetaMaps |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:21:36 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmetamaps%2Fmapdirectly/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/metamaps/mapdirectly/blobs/sha256:312f2755a582dd63f603382268c7672999c1be98d16a634af7d3613ebbca7b1a |
| Size | 2.9 KB |
| Checksum | sha256:312f2755a582dd63f603382268c7672999c1be98d16a634af7d3613ebbca7b1a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:15 (UTC) | 5 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:36 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:25 (UTC) | 3 | 2.9 KB |