nf-core/midas/run @ 0.0.0-0c7146d
Summary
A tool to estimate bacterial species abundance
Get started
Add the following snippet to your workflow script to include this module.
include { MIDAS_RUN } from 'nf-core/midas/run'
License
MIT License
Process
Name
|
MIDAS_RUN |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
Reads in FASTQ format *.{fastq.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing database information e.g. [ id:'test'] |
|---|---|
db
file
|
A database formatted for MIDAS *.{db}
|
mode
string
|
The mode to run MIDAS is *
|
|---|
Output
2 channels
#1
results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/*
file
|
A directory of results from MIDAS run *
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| midas | An integrated pipeline for estimating strain-level genomic variation from metagenomic data | https://github.com/snayfach/MIDAS |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:17:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmidas%2Frun/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/midas/run/blobs/sha256:bfac8beb1307eb599e056b8e6ce2a82e0da1b97c2876c85e449698111f4c45f8 |
| Size | 2.8 KB |
| Checksum | sha256:bfac8beb1307eb599e056b8e6ce2a82e0da1b97c2876c85e449698111f4c45f8 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:32 (UTC) | 4 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:47 (UTC) | 4 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:17:50 (UTC) | 4 | 2.8 KB |