Nextflow Modules
Showing module(s) with keyword "abundance"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bracken/bracken | bracken metagenomics abundance kraken2 | Re-estimate taxonomic abundance of metagenomic samples analyzed by kraken. |
| nf-core/catpack/reads | taxonomic classification classification long reads mags assembly abundance taxonomic composition | Taxonomic classification plus read-based abundance estimation from long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins). |
| nf-core/custom/matrixfilter | matrix filter abundance na | filter a matrix based on a minimum value and numbers of samples that must pass. |
| nf-core/midas/run | bacteria metagenomic abundance | A tool to estimate bacterial species abundance |