Nextflow Modules
Showing module(s) with keyword "abundance"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/abundance_differential_filter | Workflow | differential abundance expression count matrix fold-change | A subworkflow for filtering differential abundance results |
| nf-core/bracken/bracken | Process | bracken metagenomics abundance kraken2 | Re-estimate taxonomic abundance of metagenomic samples analyzed by kraken. |
| nf-core/catpack/reads | Process | taxonomic classification classification long reads mags assembly abundance taxonomic composition | Taxonomic classification plus read-based abundance estimation from long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins). |
| nf-core/custom/matrixfilter | Process | matrix filter abundance na | filter a matrix based on a minimum value and numbers of samples that must pass. |
| nf-core/midas/run | Process | bacteria metagenomic abundance | A tool to estimate bacterial species abundance |