nf-core/miranda @ 0.0.0-0c7146d
Summary
miRanda is an algorithm for finding genomic targets for microRNAs
Get started
Add the following snippet to your workflow script to include this module.
include { MIRANDA } from 'nf-core/miranda'
License
MIT License
Process
Name
|
MIRANDA |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
query
file
|
FASTA file containing the microRNA query sequences *.{fa,fasta}
|
mirbase
file
|
FASTA file containing the sequence(s) to be scanned *.{fa,fasta}
|
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.txt
file
|
Reformatted TXT file containing microRNA targets *.{txt}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| miranda | An algorithm for finding genomic targets for microRNAs | https://cbio.mskcc.org/miRNA2003/miranda.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:18:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmiranda/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/miranda/blobs/sha256:5c8934f30c736fa4f8c20c78494f9618d075c11dab120df585c67e8d78d10e69 |
| Size | 2.6 KB |
| Checksum | sha256:5c8934f30c736fa4f8c20c78494f9618d075c11dab120df585c67e8d78d10e69 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:30:46 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:21:58 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:10 (UTC) | 3 | 2.6 KB |