Nextflow Modules
Showing module(s) with keyword "mirna"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/miranda | Process | microrna mirna target prediction | miRanda is an algorithm for finding genomic targets for microRNAs |
| nf-core/mirtop/counts | Process | mirna isomir gff | mirtop counts generates a file with the minimal information about each sequence and the count data in columns for each samples. |
| nf-core/mirtop/export | Process | mirna isomir gff | mirtop export generates files such as fasta, vcf or compatible with isomiRs bioconductor package |
| nf-core/mirtop/gff | Process | mirna isomir gff | mirtop gff generates the GFF3 adapter format to capture miRNA variations |
| nf-core/mirtop/stats | Process | mirna isomir gff | mirtop gff gets the number of isomiRs and miRNAs annotated in the GFF file by isomiR category. |
| nf-core/seqcluster/collapse | Process | smrnaseq cluster mirna | Seqcluster collapse reduces computational complexity by collapsing identical sequences in a FASTQ file. |