Nextflow Registry | nf-core/mmseqs/createindex@0.0.0-6c4ed3a

nf-core/mmseqs/createindex @ 0.0.0-6c4ed3a

Creates sequence index for mmseqs database

protein sequence databases clustering searching indexing

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @JoseEspinosa

Maintainers: @JoseEspinosa

Creates sequence index for mmseqs database

Add the following snippet to your workflow script to include this module.

include { MMSEQS_CREATEINDEX } from 'nf-core/mmseqs/createindex'

MIT License

Process

`Name`	`MMSEQS_CREATEINDEX`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`db` directory	Directory containing the DB to be indexed `*`

Output 2 channels

#1 db_indexed tuple

`meta` directory	Directory containing the DB and the generated indexes `*`
`db` directory	Directory containing the DB and the generated indexes `*`

#2 versions_mmseqs tuple

`${task.process}` string	The name of the process
`mmseqs` string	The name of the tool
`mmseqs version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
mmseqs	MMseqs2: ultra fast and sensitive sequence search and clustering suite	https://github.com/soedinglab/MMseqs2

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:31:01 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Fcreateindex/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mmseqs/createindex/blobs/sha256:f39d5016d1414c6cad093bd3b3ccaa83d136ceb7830419b3ce50ee7d83bf806f
Size	3.9 KB
Checksum	sha256:f39d5016d1414c6cad093bd3b3ccaa83d136ceb7830419b3ce50ee7d83bf806f
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:31:01 (UTC)		4	3.9 KB
0.0.0-0c7146d	08 Apr 2026 19:18:35 (UTC)		2	3.8 KB