nf-core/mmseqs/search @ 0.0.0-6c4ed3a
Summary
Search and calculate a score for similar sequences in a query and a target database.
Get started
Add the following snippet to your workflow script to include this module.
include { MMSEQS_SEARCH } from 'nf-core/mmseqs/search'
License
MIT License
Process
Name
|
MMSEQS_SEARCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_query
file
|
Query database |
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_target
file
|
Target database |
Output
2 channels
#1
db_search
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/
directory
|
an MMseqs2 database with search results |
#2
versions_mmseqs
tuple
${task.process}
string
|
The name of the process |
|---|---|
mmseqs
string
|
The name of the tool |
mmseqs version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mmseqs | MMseqs2: ultra fast and sensitive sequence search and clustering suite | https://github.com/soedinglab/MMseqs2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:31:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Fsearch/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mmseqs/search/blobs/sha256:b496e86acbbac33a3795bc79690520481f1c19a9395a7f280ba2c0c62dd312b2 |
| Size | 3.1 KB |
| Checksum | sha256:b496e86acbbac33a3795bc79690520481f1c19a9395a7f280ba2c0c62dd312b2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:31:59 (UTC) | 3 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:50 (UTC) | 3 | 3.1 KB |